Browsing by Author "Adebambo, O.A"

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    APPLICATION OF MULTIVARIATE PRINCIPAL COMPONENT ANALYSIS TO MORPHOLOGICAL CHARACTERIZATION OF INDIGENOUS GOATS IN SOUTHERN NIGERIA.
    (Department of Animal Science, Nasarawa State University, Keffi., 2011-05-20) Yakubu, Abdulmojeed; Okpeku, M.; Peters, S.O; Ozoje, M.O; Ikeobi, C.O.N; Adebambo, O.A; Imumorin, I.G
    Phenotypic variation present in a population arises due to genotypic and environmental effects, and the magnitude of phenotypic variability differs under different environmental conditions, therefore, the purpose of this study was to objectively describe the linear type traits of extensively managed mature indigenous goats of Southern Nigeria and to predict body weight from their orthogonal shape characters using principal component analysis. Body weight and four body measurements namely, height at withers, neck length, body length and heart girth were measured in 265 randomly selected West African Dwarf (WAD) and Red Sokoto (RS) goats of both sexes. RS goats had significantly (P < 0.05) higher morphological traits compared to their WAD counterparts. Sexual dimorphism was observed in all the traits with higher values recorded for males. Phenotypic correlations among body weight and biometric traits were positive and highly significant (r = 0.76–0.91 versus 0.82–0.97 and 0.66–0.94 versus 0.83–0.91 for WAD and RS female and male goats, respectively). In the varimax rotated principal component factor analysis, two factors were extracted for each sex of the two breeds, although with varying degrees of factor loadings. The principal component based regression models, which are preferable for selecting animals for optimal balance, accounted for 89.00 and 96.00% as well as 81.00 and 91.00% of the variation in body weight of female and male WAD and RS goats, respectively. The information obtained could be useful in designing appropriate management, selection and breeding programmes for utilization of goat genetic resource
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    Application of principal component and discriminant analyses to morpho-structural indices of indigenous and exotic chickens raised under intensive management system
    (Department of Animal Science, Nasarawa State University, Keffi., 2012-04-23) Yakubu, Abdulmojeed; Ajayi, O.O; Adeleke, M.A; Sanni, Timothy M; Peters, S.O; Imumorin, I.G; Ozoje, M.O; Ikeobi, C.O.N; Adebambo, O.A
    The objectives of this study were to investigate the relationships between body weight and morpho-structural indices to predict body weight from their orthogonal body shape characters using principal component analysis and to morphologically classify the chicken genotypes using multivariate discriminant analysis. Data used were from 273 randomly selected 12-weeks-old indigenous chickens of normalfeathered (NF), frizzle-feathered (FF), naked-neck (NN) and Anak Titan (AT) genotypes. Phenotypic correlation among body weight and most biometric traits ranged from 0.227– 0.876, −0.7–0.901, 0.034–0.968 and −0.207–0.849 for NF, NN and AT chickens, respectively. Factor analysis with varimax rotation of interrelated traits revealed three principal components which accounted for 83.1%, 74.4%, 78.8% and 76.5% of the total variance in NF, FF, NN and AT chickens in the order listed. Breast girth, keel length, thigh length, shank length and wing length were found to be the most discriminating variables to separate the chicken genotypes. The longest distance (72.54) occurred between AT and NF genotypes while the shortest distance (4.27) was recorded for FF and NN genotypes. Classification results showed that 85.2% of AT genotype was correctly classified into their source population. However, 22.7%of NF was misclassified as NN, while 33.3% of NN was misclassified as NF chickens. These results suggest that there is high rate of gene flow between these two indigenous chicken genotypes. Information obtained fromthis study may be considered useful in breed improvement programmes for selection, characterization, conservation and better management of Nigerian indigenous chicken
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    GENE FLOW BETWEEN NIGERIAN SHEEP BREEDS AS REVEALED BY MICRO SATELLITE DNA MARKERS
    (Department of Animal Science, Nasarawa State University, Keffi., 2020-02-11) Yakubu, Abdulmojeeb; Agaviezor, B.0; Peters, S.O; Ajayi, F.O; Gunn, Hollingsheed H; Adefenwa, M.A; Adebambo, O.A; Ozoje, M.O; Ikeobi, C.O.N; Wheto, M.; Ajayi, O.O; Amusan, S.A; Ekundayo, J.O; Sanni, Timothy M; Okpeku, M.; Onasanya, Gbolabo O; Donato, Marcos De; Ilori, M.B; Kizilkaya, Kadir; Imumorin, I.G
    The presence and level of gene flow between the four major Nigerian sheep breeds (West African Dwarf (WAD), Yankasa, Balami and Uda) was assessed using microsatellite DNA markers. DNA was extracted from 50~1of whole blood using the ZymoBead™ Genomic DNA Kit The DNA was amplified by PCR in a MyCycler™ Thermal Cycler (Biorad, Hercules, CA) using 15microsatellite markers selected. DNA fragment analysis of microsatellite markers was carried out using the Applied BioSystems 3730xl DNA Analyzer (Applied Biosystems, Carlsbad, CA, USA). The level of gene flow or population structure was assessed by STRUCTURE software and barplots generated by DISTRUCT. At K=2, two clusters was constituted from breeds descending from Balami and Yankasa, both of which are from Northern region in Nigeria. At K=3 and K=4, one more cluster emerged and further analyses did not reveal any additional strong high level substructure, so separating the entire the entire datasets into 3 major clusters was chosen as the final configuration. There are however, several cases of adm ixtures in the genome of some of the individuals that constitute the cluster. Yankasa and Salami breed had more cases of admixtures followed by Udawhile the WAD was the least breed with cases of admixtures
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    Genetic diversity analysis of the mitochondrial D-loop of Nigerian indigenous sheep
    (Department of Animal Science, Nasarawa State University, Keffi., 2012-03-06) Agaviezor, B.O; Adefenwa, M.A; Peters, S.O; Yakubu, Abdulmojeed; Adebambo, O.A; Ozoje, M.O; Ikeobi, C.O.N; Ilori, B.M; Wheto, M.; Ajayi, O.O; Amusan, S.A; Okpeku, M.; Donato, M. De; Imumorin, I.G
    Indigenous livestock resources are strategic in the socio-economics of rural agricultural systems to ensure food security in resourcepoor countries. Therefore, better understanding of genetic variation holds the key to future utilization through conservation. We report the first analysis of genetic diversity of Nigerian sheep based on the D-loop region of the Ovis aries mitochondrial genome using 1 179 bases between sites 15 437 and 16 616 base pairs. A sample of 290 animals made up of Balami, West African Dwarf (WAD), Uda and Yankasa breeds were randomly collected from across Nigeria. Ninety-six haplotypes were observed with a high mean haplotype diversity of 0.899 ± 0.148. Gene diversity was highest in Uda (0.921 ± 0.021) and lowest in WAD (0.852 ± 0.061). Population specific FST indices varied from 0.00133 in Uda to 0.00335 in WAD. Yankasa had the highest number of polymorphic sites (201), while the least was in Uda (96). Analysis of molecular variance revealed that 0.23 percent of the variation is found among populations compared with 99.77 percent variation found within populations. The phylogenetic tree indicates that the mitochondrial lineages of these sheep breeds originated from a common source consistent with first divergence of Yankasa followed by WAD, while Balami and Uda remain more closely related. These results suggest that evolutionary divergence of Nigerian sheep breeds based on mitochondrial DNA D-loop sequence may be coincident with geographical distribution in Nigeria and suggest significant interbreeding. This could have implications for managing improvement and conservation strategies and long-term conservation of Nigerian indigenous sheep.
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    Impact assessment of improved chicken genetics on livelihoods and food security of smallholder poultry farmers in Nigeria
    (Department of Animal Science, Nasarawa State University, Keffi., 2020-07-20) Alabi, O.O; Ajayi, Folasade Olubukola; Yakubu, Abdulmojeed; Ogundu, E.U; Sonaiya, E.B; Ojo, M.A; Hassan, W.A; Adebambo, O.A
    This study aimed at assessing the impact of the African Chicken Genetic Gains project on the livelihoods, and food security of smallholder poultry farmers in Nigeria. A total of 2,100 households were selected from 60 villages located in five states representing different agro-ecological zones: Kebbi (Sudan Savanna), Kwara (Southern Guinea Savanna), Nasarawa (Derived Savanna), Imo (Humid Forest) and Rivers (Forest Lowlands and Mangrove Swamp). Each household was randomly allocated an average of 30 birds from any one of the six improved chicken breeds (Fulani, FUNAAB Alpha, Kuroiler, Noiler, Sasso and ShikaBrown) tested on-farm. Baseline survey was conducted to provide a benchmark for both the on-farm test and post-on farm survey. For each of the surveys, structured questionnaires were developed, tested and administered using the Open Data Kit data collection tool pre-installed on Lenovo tablets (Model: Lenovo TAB 2 A7-30H). Data were subjected to inferential statistics (Chi-square test and Analysis of Variance). During the on-farm study, supplementary feed and vaccination services were provided for the birds, while the households received trainings on poultry management practices. Average household size was 7. Overall, the number of households consuming eggs increased by 50% (54% - 84%) while there was a 60% (47.7% - 76.5%) increase in the number of households eating chicken meat. The number of chickens consumed/household/month increased from 1 to 2, while the number of eggs consumed/household/week increased from 1 to 3. The results showed that average household monthly income from egg sales increased by 231% from N 3,020 ($ 14) to N 7,750 ($ 36) and when cocks were sold, N 8,400 ($ 39) was added to household income. Conclusively, daily monthly household income increased from N 475 ($ 2.2) to N 750 ($ 3.5) while egg and meat consumption increased by 200% and 100%, respectively. The impact on food security, and livelihoods was a result of the performance, and productivity of the improved, high producing chicken breeds introduced by African Chicken Genetic Gains in Nigeria.
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    Molecular Diagnosis of Subclinical African Trypanosoma vivax Infection and Association with Physiological Indices and Serum Metabolites in Extensively Managed Goats in the Tropics
    (Department of Animal Science, Nasarawa State University, Keffi., 2013-06-27) Sanni, Timothy M; Onasanya, Gbolabo O; Adefenwa, Mufliat A; Yakubu, Abdulmojeed; Ikeobi, C.O.N; Adebambo, O.A; Talabi, Adewale O.; Ozoje, M.O; Wheto, M.; Takeet, Michael I.; Peters, S.O; Donato, Marcos De; Thomas, Bolaji N.; Imumorin, I.G
    Trypanosomosis remains a major challenge to livestock production in much of tropical Sub-Saharan Africa, while diagnosis and treatment still depend on inefficient parasitological techniques. Endemic infections depend on animal reservoirs with subclinical parasitemia. We report molecular diagnosis of subclinical Trypanosoma vivax (T. vivax) infection using polymerase chain reaction (PCR) for the first time in Nigerian goats and associate parasite presence with gross physiological traits and serum metabolites in extensively managed Nigerian goats. PCR was used to amplify a 400 bp DNA fragment of the parasite genome in 205 goats across three geographical zones of the country. Results showed a high subclinical infection rate (SCIR) of 71.7% in the total goats examined. Overall SCIRs of 71%, 75.9% and 55.6% were recorded in West African Dwarf, Red Sokoto and Sahel goats respectively, while geographical SCIRs were 71.2% (Southwest), 75% (Northwest) and 70% (Northeast). T. vivax presence had significant (P < 0.05) effect on respiratory rate and is associated with higher creatinine levels in sera. Logistic regression analyses with Hosmer-Lemeshow goodness- of-fit showed that respiratory rate is the most important predictive trait for the presence of T. vivax infection (P < 0.05). Goats appear to be a viable reservoir for T. vivax infection of other livestock. Molecular diagnosis of subclinical trypanosomosis using PCR could be useful for large scale epidemiological studies, early diagnosis of subclinical infection and treatment of the disease in extensively managed tropical goats.
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    Morphological and microsatellite DNA diversity of Nigerian indigenous sheep
    (Department of Animal Science, Nasarawa State University, Keffi., 2012-04-22) Agaviezor, B.O; Peters, S,O; Adefenwa, Mufliat A; Yakubu, Abdulmojeed; Adebambo, O.A; Ozoje, M.O; Ikeobi, C.O.N; Wheto, M.; Ajayi, O.O; Amusan, S.A; Ekundayo, Oludotun J; Sanni, Timothy M; Okpeku, M; Onasanya, Gbolabo O; Donato, Marcos De; Ilori, Babatunde M; Kizilkaya, Kadir; Imumorin, I.G
    Background: Sheep is important in the socio-economic lives of people around the world. It is estimated that more than half of our once common livestock breeds are now endangered. Since genetic characterization of Nigerian sheep is still lacking, we analyzed ten morphological traits on 402 animals and 15 microsatellite DNA markers in 384 animals of the 4 Nigerian sheep breeds to better understand genetic diversity for breeding management and germplasm conservation. Results: Morphological traits of Uda and Balami were significantly (P < 0.05) higher than Yankasa, which were both higher than West African Dwarf (WAD) sheep. Stepwise discriminant analysis showed tail length, rump height, chest girth, ear length and chest depth as the most discriminating variables for classification. Mahalanobis distances show the least differentiation between Uda and Balami and the largest between WAD and Balami sheep. While 93.3% of WAD sheep were correctly assigned to their source genetic group, 63.9% of Yankasa, 61.2% of Balami and 45.2% of Uda were classified correctly by nearest neighbour discriminant analysis. The overall high Polymorphism Information Content (PIC) of all microsatellite markers ranged from 0.751 to 0.927 supporting their use in genetic characterization. Expected heterozygosity was high for all loci (0.783 to 0.93). Mean heterozygote deficiency across all populations (0.171 to 0.534) possibly indicate significant inbreeding (P < 0.05). Mean values for FST, FIT and FIS statistics across all loci were 0.088, 0.394 and 0.336 respectively. Yankasa and Balami are the most closely related breeds (DA = 0.184) while WAD and Balami are the farthest apart breeds (DA = 0.665), which is coincident with distance based on morphological analysis and population structure assessed by STRUCTURE. Conclusions: These results suggest that within-breed genetic variation in Nigerian sheep is higher than between-breeds and may be a valuable tool for genetic improvement and conservation. The higher genetic variability in Yankasa suggests the presence of unique ancestral alleles reflecting the presence of certain functional genes which may result in better adaptability in more agro-ecological zones of Nigeria. These genetic characteristics are potentially useful in planning improvement and conservation strategies in Nigerian indigenous sheep
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    Physiological adaptation of local, exotic and crossbred turkeys to the hot and humid tropical environment of Nigeria.
    (Department of Animal Science, Nasarawa State University, Keffi., 2012-05-20) Ilori, B.M; Peters, S.O; Yakubu, Abdulmojeeb; Imumorin, I.G; Adeleke, M.A; Ozoje, M.O; Ikeobi, C.O.N; Adebambo, O.A
    A total of 300 birds consisting of 120 local, 120 crossbred and 60 exotic turkeys were used to compare physiological adaptation of birds raised under the high-heat stress environment of Nigerian tropical humid climate. Genotype significantly (PB0.05) affected heat tolerance traits with the highest mean values for rectal temperature, pulse-rate and heat stress index observed in exotic turkeys. Genotype also had significant (PB0.05) effect on serum biochemical parameters such as glucose (GLU), potassium (K ) and Chloride (Cl ). The haematological indices of the birds such as haemoglobin, white blood cell count and heterophyl/lymphocyte ratio (H/L) were equally affected by the different genetic groups (PB0.05). The significantly higher (PB0.05) H/L ratio of the exotic turkeys was an indication of heat stress. The better performance exhibited by local and crossbred turkeys could be exploited in management, conservation and selection decisions of animal genetic resources under tropical conditions.
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    SEQUENCE ANALYSES OF INSULIN-LIKE GROWTH FACTOR 1 GENE IN NIGERIAN INDIGENOUS AND ARBOR ACRE CHICKENS
    (Department of Animal Science, Nasarawa State University, Keffi., 2022-09-10) Wheto, M.; ISMAILA, O.O; Adeleke, M.A; Adenaike, A. S; Peters, S.O; Yakubu, Abdulmojeed; Adebambo, A.O; Ikeobi, C.O.N; Adebambo, O.A
    The chicken Insulin-like growth factor 1 (IGF1) is a candidate gene for growth, body composition and metabolism, skeletal characteristics and growth of adipose tissue and fat deposition in chickens. It is mapped to 165.95 cM on chromosome 1 and composed of four exons and three introns, spanning more than 50 kb. Genomic DNA was extracted from blood samples collected from the experimental birds using Qiagen DNA extraction kits. Polymersae chain reaction (PCR) was carried out using established primers. The PCR amplicon involving 5’untranslated region were sequenced. The sequences were analysed to identify polymorphisms, their genetic diversities and evolutionary relationships among three strains of Nigerian indigenous chickens [Frizzle Feathered (7), Normal Feathered (19) and Naked Neck (19), and the Arbor Acre broiler chicken (17)]. Nucleotide sequences generated were edited and aligned using Codon Code Aligner. Diversity analysis was done using DnaSp while MEGA6 software was used to plot phylogenetic tree using maximum likelihood method. A total of nineteen single nucleotide polymorphisms (SNPs) were detected from 560 bp portions of the 5’UTR among the four chicken populations studied with none detected in the Frizzle feathered chicken. The Naked neck chicken had the highest number of SNP’s (13), haplotypes (6), haplotype diversity (0.778), nucleotide diversity (0.00487), average number of nucleotide differences (2.725), highest number of polymorphic (segregating) sites (13), parsimony informative site (5) and singleton variable site (8). The Naked neck chicken therefore had the highest rate of mutation and degree of allelic variation compared to other chicken strains used in this study. The phylogenetic tree showed that small genetic differentiation exists among the chicken populations studied. Some of the SNPs are newly discovered; hence, association between these alleles and productive traits in Nigerian native chickens is desirable in future studies.
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    SEQUENCE ANALYSIS OF EXON 1 AND INTRON 1 OF GROWTH HORMONE GENE IN SIX CHICKEN GENOTYPES RAISED IN TROPICAL ENVIRONMENT
    (Department of Animal Science, Nasarawa State University, Keffi., 2022-04-12) Wheto, M.; Oguntuase, Ayodele Emmanuel; Adenaike, A.S; Chima, Nkiruka Goodness; Ojoawo, Henry Temitope; Yakubu, Abdulmojeed; Adebambo, A.O; Adebambo, O.A
    Chicken growth hormone (cGH) is a polypeptide hormone secreted by the pituitary gland which is responsible for several functions such as tissue growth and reproduction in chickens. This study was conducted to characterize six chicken genotypes using exon 1 and intron 1 regions of cGH gene sequences. One hundred and thirty-four (134) chickens comprising Normal feather (19), Naked neck (21), Frizzle feather (8), Arbor Acre (24), FUNAAB Alpha-1 (dihybrid) (31), and FUNAAB Alpha-2 (trihybrid) (31) were used for the study. Blood samples were collected from the birds into EDTA bottles for DNA extraction. The exon 1 and intron 1 regions of cGH were amplified using published primers. The product of the polymerase chain reaction was subjected to Sanger sequencing. DnaSP5 software was used to determine the diversity indices and MEGA6 software was used to determine the phylogenetic relationships among the six chicken genotypes and other chicken sequences. Fifteen (15) SNPs were identified in intron 1 and none in exon 1 of the cGH gene in all the six genotypes, and nine (9) of the SNPs occurred as transitions while others were transversions. The allele frequency ranged from 0.30 to 0.95 while the highest heterozygosity (0.66) was observed in mutation 410A>C in Naked neck genotype and lowest heterozygosity observed in Arbor Acre at SNP 330C>T. Polymorphic Information Content (PIC) was at the maximum in SNP 410A>C in Naked neck genotype with a value of 0.92. The exon 1 phylogeny tree revealed two clades where all the genotypes diverged. Intron 1 revealed two clades where Frizzle feather clustered with FUNAAB Alpha-1, Naked neck and FUNAAB Alpha-2 clustered together at one of the sub-clades in the second clade. Network analysis revealed Normal feather chicken as the major ancestor of all the genotypes. The study concluded that intron 1 of cGH is polymorphic in all the six chicken genotypes investigated, and this can be used as candidate gene for selection in growth-related traits.